subsecret - User contributions [en]

MediaWiki:Modern.css

2021-10-10T12:18:41Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }

MediaWiki:Modern.css

2021-10-10T12:18:33Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }
#p-navigation, #p-tb { display:none }

MediaWiki:Modern.css

2021-10-10T12:18:28Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }

MediaWiki:Modern.css

2021-10-10T12:18:24Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }
#p-navigation, #p-tb h5, #p-tb .pBody { display:none }

MediaWiki:Modern.css

2021-10-10T12:18:13Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }

MediaWiki:Modern.css

2021-10-10T12:18:08Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }
body.page-Example_Page #p-tb { display: none; }

MediaWiki:Modern.css

2021-10-10T12:18:01Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }

MediaWiki:Modern.css

2021-10-10T12:17:56Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }
.ns-0 #t-print { display: none; }

MediaWiki:Modern.css

2021-10-10T12:17:44Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }

MediaWiki:Modern.css

2021-10-10T12:17:37Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }
#p-tb { display: none; }
#t-recentchangeslinked { display: none; }

MediaWiki:Modern.css

2021-10-10T12:17:27Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }
#p-tb { display: none; }

MediaWiki:Modern.css

2021-10-10T12:17:16Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }

MediaWiki:Modern.css

2021-10-10T12:17:10Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }
#p-navigation { display: none; }

MediaWiki:Modern.css

2021-10-10T12:16:59Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }

MediaWiki:Modern.css

2021-10-10T12:16:48Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }
#mw_portlets { display: none; }

MediaWiki:Modern.css

2021-10-10T11:17:31Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }

MediaWiki:Modern.css

2021-10-10T11:17:06Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }
#p-tb { display:none; }

MediaWiki:Modern.css

2021-10-10T11:16:27Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }
#p-tools { display:none; }

MediaWiki:Modern.css

2021-10-10T11:16:23Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }
#p-tool { display:none; }

MediaWiki:Modern.css

2021-10-10T11:16:18Z

Steffen Mikkelsen:

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }
#p-toolbox { display:none; }

MediaWiki:Modern.css

2021-10-10T11:15:46Z

Steffen Mikkelsen: Created page with "/* All CSS here will be loaded for users of the Modern skin */ #p-search { display:none; }"

/* All CSS here will be loaded for users of the Modern skin */
#p-search { display:none; }

MediaWiki:Sidebar

2021-10-10T11:01:35Z

Steffen Mikkelsen:

BWA Benchmark (SBC)

2019-10-26T15:52:16Z

Steffen Mikkelsen: /* Results (32 bit) */

=BWA Benchmark (SBC)=
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:
*Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
*Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz

*Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
*1 thread benchmark
**./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
*4 threads benchmark
**./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Run on Android:
*Enable USB Debugging on device (https://www.embarcadero.com/starthere/xe5/mobdevsetup/android/en/enabling_usb_debugging_on_an_android_device.html)
*On your PC: Download Android Platform tools: https://developer.android.com/studio/releases/platform-tools
*run (from your PC)
adb push BWA-EXECUTABLE /data/local/tmp
adb push GCF_000005845.2_ASM584v2_genomic.fna.gz /data/local/tmp
adb push ecolireads.fastq.gz /data/local/tmp
*then run
adb shell

You can now set bwa as executable (chmod a+x BWA-EXECUTABLE) and generate index and run bwa from directory /data/local/tmp

==Results (32 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|211
|211
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|120
|97
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|249
|249
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|130
|130
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|289
|75
|25
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|100
|27
|16
|-
|vkworld F1 (ARMv7 Processor rev 3 (v7l))
|3.10.72
|Android 5.1
|1233
|348
|348
|-
|Linksys WRT3200ACM
|4.14.131
|OpenWrt 18.06.4
|109
|
|57
|-
|Synology ds416j
|3.10.105
|Synology
|147
|
|77
|-
|PC eee1011px Atom N570 1.66GHz
|4.4.153-perf+
|Debian 7.8
|913
|369
|369
|}

==Results (64 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2 (Amlogic S905)
|3.16.70-42
|Ubuntu 18.04.3 LTS
|607
|178
|178
|-
|ODROID-N2 (Amlogic 922x)
|4.9.185-44
|Ubuntu 18.04.3 LTS
|344
|98
|88
|-
|Mi 9T Pro (Snapdragon 855)
|4.14.83
|Android 9
|165
|46
|34
|-
|LG G5 (Snapdragon 820)
|3.18.71
|Android 8
|348
|126
|126
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|212
|56
|21
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|65
|18
|11
|-
|RPI-4
|5.3.0-1008
|Ubuntu 19.10
|350
|105
|105
|-
|Xiaomi Redmi Note 6 Pro
|4.4.153-perf+
|Android 9
|414
|101
|71
|}

BWA Benchmark (SBC)

2019-10-26T15:48:59Z

Steffen Mikkelsen: /* Results (32 bit) */

=BWA Benchmark (SBC)=
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:
*Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
*Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz

*Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
*1 thread benchmark
**./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
*4 threads benchmark
**./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Run on Android:
*Enable USB Debugging on device (https://www.embarcadero.com/starthere/xe5/mobdevsetup/android/en/enabling_usb_debugging_on_an_android_device.html)
*On your PC: Download Android Platform tools: https://developer.android.com/studio/releases/platform-tools
*run (from your PC)
adb push BWA-EXECUTABLE /data/local/tmp
adb push GCF_000005845.2_ASM584v2_genomic.fna.gz /data/local/tmp
adb push ecolireads.fastq.gz /data/local/tmp
*then run
adb shell

You can now set bwa as executable (chmod a+x BWA-EXECUTABLE) and generate index and run bwa from directory /data/local/tmp

==Results (32 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|211
|211
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|120
|97
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|249
|249
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|130
|130
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|289
|75
|25
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|100
|27
|16
|-
|vkworld F1 (ARMv7 Processor rev 3 (v7l))
|3.10.72
|Android 5.1
|1233
|348
|348
|-
|Linksys WRT3200ACM
|4.14.131
|OpenWrt 18.06.4
|109
|57
|57
|-
|Synology ds416j
|3.10.105
|Synology
|147
|77
|77
|-
|PC eee1011px Atom N570 1.66GHz
|4.4.153-perf+
|Debian 7.8
|913
|369
|369
|}

==Results (64 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2 (Amlogic S905)
|3.16.70-42
|Ubuntu 18.04.3 LTS
|607
|178
|178
|-
|ODROID-N2 (Amlogic 922x)
|4.9.185-44
|Ubuntu 18.04.3 LTS
|344
|98
|88
|-
|Mi 9T Pro (Snapdragon 855)
|4.14.83
|Android 9
|165
|46
|34
|-
|LG G5 (Snapdragon 820)
|3.18.71
|Android 8
|348
|126
|126
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|212
|56
|21
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|65
|18
|11
|-
|RPI-4
|5.3.0-1008
|Ubuntu 19.10
|350
|105
|105
|-
|Xiaomi Redmi Note 6 Pro
|4.4.153-perf+
|Android 9
|414
|101
|71
|}

BWA Benchmark (SBC)

2019-10-26T12:40:28Z

Steffen Mikkelsen: /* Results (64 bit) */

=BWA Benchmark (SBC)=
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:
*Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
*Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz

*Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
*1 thread benchmark
**./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
*4 threads benchmark
**./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Run on Android:
*Enable USB Debugging on device (https://www.embarcadero.com/starthere/xe5/mobdevsetup/android/en/enabling_usb_debugging_on_an_android_device.html)
*On your PC: Download Android Platform tools: https://developer.android.com/studio/releases/platform-tools
*run (from your PC)
adb push BWA-EXECUTABLE /data/local/tmp
adb push GCF_000005845.2_ASM584v2_genomic.fna.gz /data/local/tmp
adb push ecolireads.fastq.gz /data/local/tmp
*then run
adb shell

You can now set bwa as executable (chmod a+x BWA-EXECUTABLE) and generate index and run bwa from directory /data/local/tmp

==Results (32 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|211
|211
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|120
|97
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|249
|249
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|130
|130
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|289
|75
|25
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|100
|27
|16
|-
|vkworld F1 (ARMv7 Processor rev 3 (v7l))
|3.10.72
|Android 5.1
|1233
|348
|348
|-
|PC eee1011px Atom N570 1.66GHz
|4.4.153-perf+
|Debian 7.8
|913
|369
|369
|}

==Results (64 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2 (Amlogic S905)
|3.16.70-42
|Ubuntu 18.04.3 LTS
|607
|178
|178
|-
|ODROID-N2 (Amlogic 922x)
|4.9.185-44
|Ubuntu 18.04.3 LTS
|344
|98
|88
|-
|Mi 9T Pro (Snapdragon 855)
|4.14.83
|Android 9
|165
|46
|34
|-
|LG G5 (Snapdragon 820)
|3.18.71
|Android 8
|348
|126
|126
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|212
|56
|21
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|65
|18
|11
|-
|RPI-4
|5.3.0-1008
|Ubuntu 19.10
|350
|105
|105
|-
|Xiaomi Redmi Note 6 Pro
|4.4.153-perf+
|Android 9
|414
|101
|71
|}

BWA Benchmark (SBC)

2019-10-26T12:25:00Z

Steffen Mikkelsen: /* Results (64 bit) */

=BWA Benchmark (SBC)=
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:
*Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
*Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz

*Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
*1 thread benchmark
**./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
*4 threads benchmark
**./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Run on Android:
*Enable USB Debugging on device (https://www.embarcadero.com/starthere/xe5/mobdevsetup/android/en/enabling_usb_debugging_on_an_android_device.html)
*On your PC: Download Android Platform tools: https://developer.android.com/studio/releases/platform-tools
*run (from your PC)
adb push BWA-EXECUTABLE /data/local/tmp
adb push GCF_000005845.2_ASM584v2_genomic.fna.gz /data/local/tmp
adb push ecolireads.fastq.gz /data/local/tmp
*then run
adb shell

You can now set bwa as executable (chmod a+x BWA-EXECUTABLE) and generate index and run bwa from directory /data/local/tmp

==Results (32 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|211
|211
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|120
|97
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|249
|249
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|130
|130
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|289
|75
|25
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|100
|27
|16
|-
|vkworld F1 (ARMv7 Processor rev 3 (v7l))
|3.10.72
|Android 5.1
|1233
|348
|348
|-
|PC eee1011px Atom N570 1.66GHz
|4.4.153-perf+
|Debian 7.8
|913
|369
|369
|}

==Results (64 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2 (Amlogic S905)
|3.16.70-42
|Ubuntu 18.04.3 LTS
|607
|178
|178
|-
|ODROID-N2 (Amlogic 922x)
|4.9.185-44
|Ubuntu 18.04.3 LTS
|344
|98
|88
|-
|Mi 9T Pro (Snapdragon 855)
|4.14.83
|Android 9
|165
|46
|34
|-
|LG G5 (Snapdragon 820)
|3.18.71
|Android 8
|348
|126
|126
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|212
|56
|21
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|65
|18
|11
|-
|RPI-4
|5
|Ubuntu 19.10
|
|105
|105
|-
|Xiaomi Redmi Note 6 Pro
|4.4.153-perf+
|Android 9
|414
|101
|71
|}

BWA Benchmark (SBC)

2019-10-04T07:38:12Z

Steffen Mikkelsen: /* Results (32 bit) */

=BWA Benchmark (SBC)=
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:
*Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
*Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz

*Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
*1 thread benchmark
**./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
*4 threads benchmark
**./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Run on Android:
*Enable USB Debugging on device (https://www.embarcadero.com/starthere/xe5/mobdevsetup/android/en/enabling_usb_debugging_on_an_android_device.html)
*On your PC: Download Android Platform tools: https://developer.android.com/studio/releases/platform-tools
*run (from your PC)
adb push BWA-EXECUTABLE /data/local/tmp
adb push GCF_000005845.2_ASM584v2_genomic.fna.gz /data/local/tmp
adb push ecolireads.fastq.gz /data/local/tmp
*then run
adb shell

You can now set bwa as executable (chmod a+x BWA-EXECUTABLE) and generate index and run bwa from directory /data/local/tmp

==Results (32 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|211
|211
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|120
|97
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|249
|249
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|130
|130
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|289
|75
|25
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|100
|27
|16
|-
|vkworld F1 (ARMv7 Processor rev 3 (v7l))
|3.10.72
|Android 5.1
|1233
|348
|348
|-
|PC eee1011px Atom N570 1.66GHz
|4.4.153-perf+
|Debian 7.8
|913
|369
|369
|}

==Results (64 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2 (Amlogic S905)
|3.16.70-42
|Ubuntu 18.04.3 LTS
|607
|178
|178
|-
|ODROID-N2 (Amlogic 922x)
|4.9.185-44
|Ubuntu 18.04.3 LTS
|344
|98
|88
|-
|Mi 9T Pro (Snapdragon 855)
|4.14.83
|Android 9
|165
|46
|34
|-
|LG G5 (Snapdragon 820)
|3.18.71
|Android 8
|348
|126
|126
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|212
|56
|21
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|65
|18
|11
|-
|Xiaomi Redmi Note 6 Pro
|4.4.153-perf+
|Android 9
|414
|101
|71
|}

BWA Benchmark (SBC)

2019-10-04T07:37:36Z

Steffen Mikkelsen: /* Results (64 bit) */

=BWA Benchmark (SBC)=
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:
*Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
*Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz

*Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
*1 thread benchmark
**./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
*4 threads benchmark
**./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Run on Android:
*Enable USB Debugging on device (https://www.embarcadero.com/starthere/xe5/mobdevsetup/android/en/enabling_usb_debugging_on_an_android_device.html)
*On your PC: Download Android Platform tools: https://developer.android.com/studio/releases/platform-tools
*run (from your PC)
adb push BWA-EXECUTABLE /data/local/tmp
adb push GCF_000005845.2_ASM584v2_genomic.fna.gz /data/local/tmp
adb push ecolireads.fastq.gz /data/local/tmp
*then run
adb shell

You can now set bwa as executable (chmod a+x BWA-EXECUTABLE) and generate index and run bwa from directory /data/local/tmp

==Results (32 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|211
|211
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|120
|97
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|249
|249
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|130
|130
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|289
|75
|25
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|100
|27
|16
|-
|vkworld F1 (ARMv7 Processor rev 3 (v7l))
|3.10.72
|5.1
|1233
|348
|348
|-
|PC eee1011px Atom N570 1.66GHz
|4.4.153-perf+
|Debian 7.8
|913
|369
|369
|}

==Results (64 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2 (Amlogic S905)
|3.16.70-42
|Ubuntu 18.04.3 LTS
|607
|178
|178
|-
|ODROID-N2 (Amlogic 922x)
|4.9.185-44
|Ubuntu 18.04.3 LTS
|344
|98
|88
|-
|Mi 9T Pro (Snapdragon 855)
|4.14.83
|Android 9
|165
|46
|34
|-
|LG G5 (Snapdragon 820)
|3.18.71
|Android 8
|348
|126
|126
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|212
|56
|21
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|65
|18
|11
|-
|Xiaomi Redmi Note 6 Pro
|4.4.153-perf+
|Android 9
|414
|101
|71
|}

BWA Benchmark (SBC)

2019-10-04T07:33:22Z

Steffen Mikkelsen: /* Results (32 bit) */

=BWA Benchmark (SBC)=
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:
*Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
*Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz

*Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
*1 thread benchmark
**./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
*4 threads benchmark
**./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Run on Android:
*Enable USB Debugging on device (https://www.embarcadero.com/starthere/xe5/mobdevsetup/android/en/enabling_usb_debugging_on_an_android_device.html)
*On your PC: Download Android Platform tools: https://developer.android.com/studio/releases/platform-tools
*run (from your PC)
adb push BWA-EXECUTABLE /data/local/tmp
adb push GCF_000005845.2_ASM584v2_genomic.fna.gz /data/local/tmp
adb push ecolireads.fastq.gz /data/local/tmp
*then run
adb shell

You can now set bwa as executable (chmod a+x BWA-EXECUTABLE) and generate index and run bwa from directory /data/local/tmp

==Results (32 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|211
|211
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|120
|97
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|249
|249
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|130
|130
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|289
|75
|25
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|100
|27
|16
|-
|vkworld F1 (ARMv7 Processor rev 3 (v7l))
|3.10.72
|5.1
|1233
|348
|348
|-
|PC eee1011px Atom N570 1.66GHz
|4.4.153-perf+
|Debian 7.8
|913
|369
|369
|}

==Results (64 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2 (Amlogic S905)
|3.16.70-42
|Ubuntu 18.04.3 LTS
|607
|178
|178
|-
|ODROID-N2 (Amlogic 922x)
|4.9.185-44
|Ubuntu 18.04.3 LTS
|344
|98
|88
|-
|Mi 9T Pro (Snapdragon 855)
|4.14.83
|Android 9
|165
|46
|34
|-
|LG G5 (Snapdragon 820)
|3.18.71
|Android 8
|348
|126
|126
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|212
|56
|21
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|65
|18
|11
|}

BWA Benchmark (SBC)

2019-10-04T07:30:45Z

Steffen Mikkelsen:

=BWA Benchmark (SBC)=
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:
*Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
*Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz

*Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
*1 thread benchmark
**./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
*4 threads benchmark
**./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Run on Android:
*Enable USB Debugging on device (https://www.embarcadero.com/starthere/xe5/mobdevsetup/android/en/enabling_usb_debugging_on_an_android_device.html)
*On your PC: Download Android Platform tools: https://developer.android.com/studio/releases/platform-tools
*run (from your PC)
adb push BWA-EXECUTABLE /data/local/tmp
adb push GCF_000005845.2_ASM584v2_genomic.fna.gz /data/local/tmp
adb push ecolireads.fastq.gz /data/local/tmp
*then run
adb shell

You can now set bwa as executable (chmod a+x BWA-EXECUTABLE) and generate index and run bwa from directory /data/local/tmp

==Results (32 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|211
|211
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|120
|97
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|249
|249
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|130
|130
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|289
|75
|25
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|100
|27
|16
|-
|vkworld F1 (ARMv7 Processor rev 3 (v7l))
|3.10.72
|5.1
|1233
|348
|348
|-
|PC eee1011px Atom N570 1.66GHz
|4.4.153-perf+
|9
|913
|369
|369
|}

==Results (64 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2 (Amlogic S905)
|3.16.70-42
|Ubuntu 18.04.3 LTS
|607
|178
|178
|-
|ODROID-N2 (Amlogic 922x)
|4.9.185-44
|Ubuntu 18.04.3 LTS
|344
|98
|88
|-
|Mi 9T Pro (Snapdragon 855)
|4.14.83
|Android 9
|165
|46
|34
|-
|LG G5 (Snapdragon 820)
|3.18.71
|Android 8
|348
|126
|126
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|212
|56
|21
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|65
|18
|11
|}

BWA Benchmark (SBC)

2019-10-03T14:16:38Z

Steffen Mikkelsen:

=BWA Benchmark (SBC)=
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:
*Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
*Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz

*Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
*1 thread benchmark
**./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
*4 threads benchmark
**./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Run on Android:
*Enable USB Debugging on device (https://www.embarcadero.com/starthere/xe5/mobdevsetup/android/en/enabling_usb_debugging_on_an_android_device.html)
*On your PC: Download Android Platform tools: https://developer.android.com/studio/releases/platform-tools
*run (from your PC)
adb push BWA-EXECUTABLE /data/local/tmp
adb push GCF_000005845.2_ASM584v2_genomic.fna.gz /data/local/tmp
adb push ecolireads.fastq.gz /data/local/tmp
*then run
adb shell

You can now set bwa as executable (chmod a+x BWA-EXECUTABLE) and generate index and run bwa from directory /data/local/tmp

==Results (32 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|211
|211
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|120
|97
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|249
|249
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|130
|130
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|289
|75
|25
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|100
|27
|16
|}

==Results (64 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2 (Amlogic S905)
|3.16.70-42
|Ubuntu 18.04.3 LTS
|607
|178
|178
|-
|ODROID-N2 (Amlogic 922x)
|4.9.185-44
|Ubuntu 18.04.3 LTS
|344
|98
|88
|-
|Mi 9T Pro (Snapdragon 855)
|4.14.83
|Android 9
|165
|46
|34
|-
|LG G5 (Snapdragon 820)
|3.18.71
|Android 8
|348
|126
|126
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|212
|56
|21
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|65
|18
|11
|}

BWA Benchmark (SBC)

2019-10-03T13:56:16Z

Steffen Mikkelsen:

=BWA Benchmark (SBC)=
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:
*Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
*Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz

*Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
*1 thread benchmark
**./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
*4 threads benchmark
**./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Run on Android:
*Enable USB Debugging on device (https://www.embarcadero.com/starthere/xe5/mobdevsetup/android/en/enabling_usb_debugging_on_an_android_device.html)
*On your PC: Download Android Platform tools: https://developer.android.com/studio/releases/platform-tools
*run (from your PC)
adb push BWA-EXECUTABLE /data/local/tmp
adb push GCF_000005845.2_ASM584v2_genomic.fna.gz /data/local/tmp
adb push ecolireads.fastq.gz /data/local/tmp
*then run
adb shell

You can now set bwa as executable (chmod a+x BWA-EXECUTABLE) and generate index and run bwa from directory /data/local/tmp

==Results (32 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|211
|211
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|120
|97
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|249
|249
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|130
|130
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|289
|75
|25
|-
|}

==Results (64 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2 (Amlogic S905)
|3.16.70-42
|Ubuntu 18.04.3 LTS
|607
|178
|178
|-
|ODROID-N2 (Amlogic 922x)
|4.9.185-44
|Ubuntu 18.04.3 LTS
|344
|98
|88
|-
|Mi 9T Pro (Snapdragon 855)
|4.14.83
|Android 9
|165
|46
|34
|-
|LG G5 (Snapdragon 820)
|3.18.71
|Android 8
|348
|126
|126
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|212
|56
|21
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|100
|27
|16
|}

BWA Benchmark (SBC)

2019-10-03T13:45:52Z

Steffen Mikkelsen:

=BWA Benchmark (SBC)=
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:
*Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
*Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz

*Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
*1 thread benchmark
**./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
*4 threads benchmark
**./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Run on Android:
*Enable USB Debugging on device (https://www.embarcadero.com/starthere/xe5/mobdevsetup/android/en/enabling_usb_debugging_on_an_android_device.html)
*On your PC: Download Android Platform tools: https://developer.android.com/studio/releases/platform-tools
*run (from your PC)
adb push BWA-EXECUTABLE /data/local/tmp
adb push GCF_000005845.2_ASM584v2_genomic.fna.gz /data/local/tmp
adb push ecolireads.fastq.gz /data/local/tmp
*then run
adb shell

You can now set bwa as executable (chmod a+x BWA-EXECUTABLE) and generate index and run bwa from directory /data/local/tmp

==Results (32 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|211
|211
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|120
|97
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|249
|249
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|130
|130
|}

==Results (64 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2 (Amlogic S905)
|3.16.70-42
|Ubuntu 18.04.3 LTS
|607
|178
|178
|-
|ODROID-N2 (Amlogic 922x)
|4.9.185-44
|Ubuntu 18.04.3 LTS
|344
|98
|88
|-
|Mi 9T Pro (Snapdragon 855)
|4.14.83
|Android 9
|165
|46
|34
|-
|LG G5 (Snapdragon 820)
|3.18.71
|Android 8
|348
|126
|126
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|212
|56
|21
|-
|PC (i7-8700k@4.7GHz)
|5.2.15-200
|Fedora 30
|100
|27
|16
|}

BWA Benchmark (SBC)

2019-10-03T13:37:41Z

Steffen Mikkelsen: /* Results (64 bit) */

=BWA Benchmark (SBC)=
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:
*Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
*Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz

*Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
*1 thread benchmark
**./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
*4 threads benchmark
**./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Run on Android:
*Enable USB Debugging on device (https://www.embarcadero.com/starthere/xe5/mobdevsetup/android/en/enabling_usb_debugging_on_an_android_device.html)
*On your PC: Download Android Platform tools: https://developer.android.com/studio/releases/platform-tools
*run (from your PC)
adb push BWA-EXECUTABLE /data/local/tmp
adb push GCF_000005845.2_ASM584v2_genomic.fna.gz /data/local/tmp
adb push ecolireads.fastq.gz /data/local/tmp
*then run
adb shell

You can now set bwa as executable (chmod a+x BWA-EXECUTABLE) and generate index and run bwa from directory /data/local/tmp

==Results (32 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|211
|211
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|120
|97
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|249
|249
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|130
|130
|}

==Results (64 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2 (Amlogic S905)
|3.16.70-42
|Ubuntu 18.04.3 LTS
|607
|178
|178
|-
|ODROID-N2 (Amlogic 922x)
|4.9.185-44
|Ubuntu 18.04.3 LTS
|344
|98
|88
|-
|Mi 9T Pro (Snapdragon 855)
|4.14.83
|Android 9
|165
|46
|34
|-
|LG G5 (Snapdragon 820)
|3.18.71
|Android 8
|348
|126
|126
|-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|212
|56
|21
|}

BWA Benchmark (SBC)

2019-10-03T13:37:25Z

Steffen Mikkelsen:

=BWA Benchmark (SBC)=
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:
*Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
*Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz

*Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
*1 thread benchmark
**./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
*4 threads benchmark
**./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Run on Android:
*Enable USB Debugging on device (https://www.embarcadero.com/starthere/xe5/mobdevsetup/android/en/enabling_usb_debugging_on_an_android_device.html)
*On your PC: Download Android Platform tools: https://developer.android.com/studio/releases/platform-tools
*run (from your PC)
adb push BWA-EXECUTABLE /data/local/tmp
adb push GCF_000005845.2_ASM584v2_genomic.fna.gz /data/local/tmp
adb push ecolireads.fastq.gz /data/local/tmp
*then run
adb shell

You can now set bwa as executable (chmod a+x BWA-EXECUTABLE) and generate index and run bwa from directory /data/local/tmp

==Results (32 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|211
|211
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|120
|97
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|249
|249
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|130
|130
|}

==Results (64 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2 (Amlogic S905)
|3.16.70-42
|Ubuntu 18.04.3 LTS
|607
|178
|178
|-
|ODROID-N2 (Amlogic 922x)
|4.9.185-44
|Ubuntu 18.04.3 LTS
|344
|98
|88
|-
|Mi 9T Pro (Snapdragon 855)
|4.14.83
|Android 9
|165
|46
|34
|-
|LG G5 (Snapdragon 820)
|3.18.71
|Android 8
|348
|126
|126
-
|a1.4xlarge (16 cores)
|5.0.0-1016-aws
|Ubuntu 19.04
|212
|56
|21
|}

BWA Benchmark (SBC)

2019-10-03T13:20:35Z

Steffen Mikkelsen:

=BWA Benchmark (SBC)=
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:
*Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
*Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz

*Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
*1 thread benchmark
**./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
*4 threads benchmark
**./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Run on Android:
*Enable USB Debugging on device (https://www.embarcadero.com/starthere/xe5/mobdevsetup/android/en/enabling_usb_debugging_on_an_android_device.html)
*On your PC: Download Android Platform tools: https://developer.android.com/studio/releases/platform-tools
*run (from your PC)
adb push BWA-EXECUTABLE /data/local/tmp
adb push GCF_000005845.2_ASM584v2_genomic.fna.gz /data/local/tmp
adb push ecolireads.fastq.gz /data/local/tmp
*then run
adb shell

You can now set bwa as executable (chmod a+x BWA-EXECUTABLE) and generate index and run bwa from directory /data/local/tmp

==Results (32 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|211
|211
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|120
|97
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|249
|249
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|130
|130
|}

==Results (64 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2 (Amlogic S905)
|3.16.70-42
|Ubuntu 18.04.3 LTS
|607
|178
|178
|-
|ODROID-N2 (Amlogic 922x)
|4.9.185-44
|Ubuntu 18.04.3 LTS
|344
|98
|88
|-
|Mi 9T Pro (Snapdragon 855)
|4.14.83
|Android 9
|165
|46
|34
|-
|LG G5 (Snapdragon 820)
|3.18.71
|Android 8
|348
|126
|126
|}

BWA Benchmark (SBC)

2019-10-03T13:19:29Z

Steffen Mikkelsen:

=BWA Benchmark (SBC)=
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:
*Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
*Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz

*Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
*1 thread benchmark
**./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
*4 threads benchmark
**./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Run on Android:
*Enable USB Debugging on device (https://www.embarcadero.com/starthere/xe5/mobdevsetup/android/en/enabling_usb_debugging_on_an_android_device.html)
*Download Android Platform tools: https://developer.android.com/studio/releases/platform-tools
*run
adb push BWA-EXECUTABLE /data/local/tmp
adb push GCF_000005845.2_ASM584v2_genomic.fna.gz /data/local/tmp
adb push ecolireads.fastq.gz /data/local/tmp
*then run
adb shell

You can now set bwa as executable (chmod a+x BWA-EXECUTABLE) and generate index and run bwa from directory /data/local/tmp

==Results (32 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|211
|211
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|120
|97
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|249
|249
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|130
|130
|}

==Results (64 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2 (Amlogic S905)
|3.16.70-42
|Ubuntu 18.04.3 LTS
|607
|178
|178
|-
|ODROID-N2 (Amlogic 922x)
|4.9.185-44
|Ubuntu 18.04.3 LTS
|344
|98
|88
|-
|Mi 9T Pro (Snapdragon 855)
|4.14.83
|Android 9
|165
|46
|34
|-
|LG G5 (Snapdragon 820)
|3.18.71
|Android 8
|348
|126
|126
|}

BWA Benchmark (SBC)

2019-10-03T13:17:05Z

Steffen Mikkelsen:

=BWA Benchmark (SBC)=
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:
*Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
*Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz

*Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
*1 thread benchmark
**./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
*4 threads benchmark
**./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Run on Android:
*Enable USB Debugging on device (https://www.embarcadero.com/starthere/xe5/mobdevsetup/android/en/enabling_usb_debugging_on_an_android_device.html)
*Download Android Platform tools: https://developer.android.com/studio/releases/platform-tools
*run
adb push BWA-EXECUTABLE /data/local/tmp
adb push GCF_000005845.2_ASM584v2_genomic.fna.gz /data/local/tmp
adb push ecolireads.fastq.gz /data/local/tmp
*then run
adb shell

You can now generate index and run bwa from directory /data/local/tmp

==Results (32 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|211
|211
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|120
|97
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|249
|249
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|130
|130
|}

==Results (64 bit)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!1 thread walltime (sec.)
!4 threads walltime (sec.)
!MAX threads walltime (sec.)
|-
|ODROID-C2 (Amlogic S905)
|3.16.70-42
|Ubuntu 18.04.3 LTS
|607
|178
|178
|-
|ODROID-N2 (Amlogic 922x)
|4.9.185-44
|Ubuntu 18.04.3 LTS
|344
|98
|88
|-
|Mi 9T Pro (Snapdragon 855)
|4.14.83
|Android 9
|165
|46
|34
|-
|LG G5 (Snapdragon 820)
|3.18.71
|Android 8
|348
|126
|126
|}

BWA Benchmark (SBC)

2019-10-03T13:16:42Z

Steffen Mikkelsen:

BWA Benchmark (SBC)

2019-09-07T15:12:39Z

Steffen Mikkelsen:

BWA Benchmark (SBC)

2019-09-07T15:12:14Z

Steffen Mikkelsen:

BWA Benchmark (SBC)

2019-09-07T15:04:48Z

Steffen Mikkelsen:

BWA Benchmark (SBC)

2019-09-07T14:57:15Z

Steffen Mikkelsen:

BWA Benchmark (SBC)

2019-09-07T14:55:02Z

Steffen Mikkelsen:

BWA Benchmark (SBC)

2019-09-07T14:54:51Z

Steffen Mikkelsen:

FIO Benchmark

2019-08-06T19:27:15Z

Steffen Mikkelsen: /* Results (rand write) */

==Results (rand read)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!mb/s
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|12
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|971
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|8
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|15
|}

==Results (rand write)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!mb/s
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|
|}

FIO Benchmark

2019-08-06T19:25:51Z

Steffen Mikkelsen: /* Results (rand read) */

==Results (rand read)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!mb/s
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|12
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|971
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|8
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|15
|}

==Results (rand write)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!mb/s
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|}

FIO Benchmark

2019-08-06T19:25:37Z

Steffen Mikkelsen: /* Results (rand read) */

==Results (rand read)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!mb/s
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|12
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|971
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|8
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|
|}

==Results (rand write)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!mb/s
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|}

FIO Benchmark

2019-08-06T19:23:03Z

Steffen Mikkelsen: /* Results (rand read) */

==Results (rand read)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!mb/s
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|11.6
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|971
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|
|}

==Results (rand write)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!mb/s
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|}

FIO Benchmark

2019-08-06T19:22:54Z

Steffen Mikkelsen: /* Results (rand read) */

==Results (rand read)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!mb/s
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|11.6MB/s
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|971MB/s
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|
|}

==Results (rand write)==
{| class="wikitable sortable"
!Device
!Kernel
!OS
!mb/s
|-
|ODROID-C2
|3.16.70-42
|Ubuntu 18.04.3 LTS
|748
|-
|ODROID-N2
|4.9.185-44
|Ubuntu 18.04.3 LTS
|435
|-
|RPI-3
|4.19.58-v7+
|Raspbian (Buster)
|852
|-
|RPI-4
|4.19.58-v7l+
|Raspbian (Buster)
|459
|}