From subsecret
No edit summary |
No edit summary |
||
| Line 22: | Line 22: | ||
|- | |- | ||
|ODROID-C2 | |ODROID-C2 | ||
| | | | ||
| | | | ||
| Line 30: | Line 29: | ||
|- | |- | ||
|ODROID-N2 | |ODROID-N2 | ||
| | | | ||
| | | | ||
| Line 38: | Line 36: | ||
|- | |- | ||
|RPI-3 | |RPI-3 | ||
| | | | ||
| | | | ||
Revision as of 12:00, 6 August 2019
BWA Benchmark
Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)
Dataset:
- Retrieve https://files.subsecret.dk/benchmark/GCF_000005845.2_ASM584v2_genomic.fna.gz
- Retrieve (normal size benchmark) https://files.subsecret.dk/benchmark/ecolireads.fastq.gz
- Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
- 1 thread benchmark
- ./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
- 4 threads benchmark
- ./bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
Results (32 bit)
| Device | Kernel | OS | 1 thread walltime (sec.) | 4 threads walltime (sec.) | MAX threads walltime (sec.) |
|---|---|---|---|---|---|
| ODROID-C2 | |||||
| ODROID-N2 | |||||
| RPI-3 | |||||
| RPI-4 |
