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|Fedora 24
|Fedora 24
|6.1.1
|6.1.1
| 77.836 sec
|77.836 sec
| 27.840 sec
|27.840 sec
|-  
|-  
|ODROID U2
|ODROID U2
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|4.8.4
|4.8.4
|939.300 sec
|939.300 sec
|
|266.262 sec
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|-
|ODROID C2
|ODROID C2

Revision as of 13:34, 30 July 2016

BWA Benchmark

BWA is a tool for mapping reads against a genome. This is nice for doing a non-synthetic benchmark, as meaningful work is done, and IO, Memory and CPU is all used.

BWA Setup instructions

Running Benchmark

Benchmark command

  • 1 thread
    • bwa aln GCF_000005845.2_ASM584v2_genomic.fna ecoli_ref-5m-trim.fastq > /dev/null
  • 4 threads
    • bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna ecoli_ref-5m-trim.fastq > /dev/null


Results

Device ARCH Kernel OS GCC 1 thread walltime 4 thread walltime
PC (i7-6700k@4.5 GHz) x86 4.6.4-301.fc24.x86_64 Fedora 24 6.1.1 144.221 sec 53.833 sec
PC (i7-6700k@4.5 GHz) x64 4.6.4-301.fc24.x86_64 Fedora 24 6.1.1 77.836 sec 27.840 sec
ODROID U2 armhf 3.8.13.30 Ubuntu 14.04.4 LTS 4.8.4 939.300 sec 266.262 sec
ODROID C2 aarch64 Ubuntu 16.04 LTS
Raspberry PI 3 aarch64 Fedora 24