From subsecret
Jump to: navigation, search

BWA Benchmark

BWA Setup instructions

Running Benchmark

Benchmark command

  • 1 thread
    • bwa aln GCF_000005845.2_ASM584v2_genomic.fna ecoli_ref-5m-trim.fastq > /dev/null
  • 4 threads
    • bwa aln -t4 GCF_000005845.2_ASM584v2_genomic.fna ecoli_ref-5m-trim.fastq > /dev/null


Results

Device ARCH OS Kernel GCC 1 thread walltime 4 thread walltime
ODROID U2 armhf 3.8.13.30 Ubuntu 14.04.4 LTS 4.8.4
ODROID C2 aarch64 Ubuntu 16.04 LTS
Raspberry PI 3 aarch64 Fedora 24