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Line 30: Line 30:
|ODROID-N2
|ODROID-N2
|4.9.185-44
|4.9.185-44
|
|Ubuntu 18.04.3 LTS
|435
|120
|120
|
|97
|
|-
|-
|RPI-3
|RPI-3

Revision as of 13:18, 6 August 2019

BWA Benchmark

Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:

  • Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
  • 1 thread benchmark
    • ./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null
  • 4 threads benchmark
    • ./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz > /dev/null

Results (32 bit)

Device Kernel OS 1 thread walltime (sec.) 4 threads walltime (sec.) MAX threads walltime (sec.)
ODROID-C2
ODROID-N2 4.9.185-44 Ubuntu 18.04.3 LTS 435 120 97
RPI-3
RPI-4