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BWA Benchmark

Using BWA from https://github.com/smikkelsendk/bwa-for-arm/tree/master/bin (with NEON)

Dataset:

  • Run ./bwa index GCF_000005845.2_ASM584v2_genomic.fna.gz
  • 1 thread benchmark
    • ./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz | md5sum
  • 4 threads benchmark
    • ./bwa aln GCF_000005845.2_ASM584v2_genomic.fna.gz ecolireads.fastq.gz | md5sum

md5sum should be: de294827bc9a82464de0cad19bf214ec

Results (32 bit)

Device Kernel OS 1 thread walltime (sec.) 4 threads walltime (sec.) MAX threads walltime (sec.)
ODROID-C2
ODROID-N2 4.9.185-44 120
RPI-3
RPI-4